Columbia University in the City of New York

Tavazoie Lab


Supplementary web site for “Large-scale discovery and characterization of protein regulatory motifs in eukaryotes”

Daniel S. Lieber, Olivier Elemento and Saeed Tavazoie

Lewis-Sigler Institute for Integrative Genomics, Princeton University

IGET: Use FIRE-pro online

FIRE-pro is the protein motif discovery component of IGET, an integrated platform for exploring large-scale gene expression and protein behavior dynamics. Use IGET to discover motifs, pathways, and interactions.

To contact us: D. Lieber, O. Elemento, S. Tavazoie

PLoS One. 2010 December 29;5(12):e14444 PDF.

Sample results

How can I use FIRE-pro?

FIRE-pro can be downloaded and installed on a Unix (or Cygwin) machine. Click here to download FIRE-pro.

FIRE-pro can also be used online. Click here for the online FIRE-pro application (created by Bambi Tsui, Princeton).

FIRE-pro is a powerful program, with many options and many output files. Click here for a tutorial on how to install and use FIRE-pro.

If you encounter a bug in the FIRE-pro package, please contact us.

Supplementary Material

Full list of motifs found with FIRE-pro: txt xls pdf

© 2011 Columbia University