FIRE

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stage11-12_embryonic_central_brain_neuron.txt

Summary

FIRE has discovered 3 motifs from the query data, consisting of 3 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[CGT]A[ACT]GCGC[AG][ACT]5'Y PDF PNG EPS
.CT[AC]AC[AG]A[ACG]5' PDF PNG EPS
[CGT]AG[GT]GAT[ACG].5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.