721_B_lymphoblasts_721_B_lymphoblasts.txt
Summary
FIRE has discovered 25 motifs from the query data, consisting of 23 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .CCGGAA[AG]. 5' Y PDF PNG EPS [GT]C[AC]T[AGT]CGC[AGT] 5' Y PDF PNG EPS .ATG.CG[GT]. 5' PDF PNG EPS .[AG]CTACG[CG]. 5' PDF PNG EPS .[CG]UUUUU[AGU][ACU] 3'UTR Y PDF PNG EPS .ACGT[ACT]C[GT]. 5' PDF PNG EPS [AG]C[CG][AG]AT[AC][AG]. 5' PDF PNG EPS [CGT][AC][AT]CGC[AG]A[CGT] 5' PDF PNG EPS .[AC]GTG[AT]CG[CGT] 5' PDF PNG EPS .A[AG]T[AT]C[CG]G[CGT] 5' PDF PNG EPS .[CG]TT.ACG. 5' PDF PNG EPS .[CT]A[AC][AG]ACG. 5' PDF PNG EPS [CGT]T[ACT]GT[AC]G[CT][CGT] 5' PDF PNG EPS [AGT][AT]CGC[CT][AG][AT][AG] 5' Y PDF PNG EPS [AGT]CTA[ACG]C[CG]G. 5' PDF PNG EPS [AC][CU]CG[CG]CCC. 3'UTR Y PDF PNG EPS .[AT]A[AC]GCCG[CG] 5' PDF PNG EPS .C[ACG]ACG[GT]A. 5' PDF PNG EPS [AGT][ACT]GCG[AT]AC. 5' PDF PNG EPS [AC]CA[GT]GC[AT]G[AGT] 5' PDF PNG EPS [ACG]AGA[CG]AGA[AGT] 5' Y PDF PNG EPS [ACG]CGT[GT][AGT]TC[CGT] 5' PDF PNG EPS [CGT]AA[ACG]G[GT]CG[AG] 5' PDF PNG EPS [ACG][AT]CA[CT]ACA[ACG] 5' PDF PNG EPS .[GT]ATTTAC[ACT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.