FIRE

Appendix_Appendix.txt

Summary

FIRE has discovered 13 motifs from the query data, consisting of 13 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCGGAA[CG].	5'			PDF	PNG	EPS
.AAA[AT]TCT.	5'		Y	PDF	PNG	EPS
[CGT]CG[CT]AT[GT][AC]G	5'			PDF	PNG	EPS
[CGT]CGTCG[AGT][AC]G	5'			PDF	PNG	EPS
[ACT]T[CG]AATG[CGT][ACG]	5'			PDF	PNG	EPS
.CGACT[AT][ACG].	5'			PDF	PNG	EPS
.CGCACG[AC].	5'			PDF	PNG	EPS
[AC]ATG[ACG]CG[ACG][ACT]	5'		Y	PDF	PNG	EPS
[CGT]A[AGT]ATAAG[CG]	5'			PDF	PNG	EPS
.CGGTCG[AC].	5'			PDF	PNG	EPS
[ACG]AC[AT]GCGC[CG]	5'			PDF	PNG	EPS
.ATG[ACT]TCT[CT]	5'			PDF	PNG	EPS
.TC[GT]TCGC.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.