FIRE

BM-CD105+Endothelial_BM-CD105+Endothelial.txt

Summary

FIRE has discovered 15 motifs from the query data, consisting of 15 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.[CG]CGGAAG[ACT]	5'			PDF	PNG	EPS
[ACG]CG[AC]AT[AG][ACG][CGT]	5'			PDF	PNG	EPS
[CGT]CG[CT][CG]A[AT]A[ACG]	5'			PDF	PNG	EPS
[CGT]TTC[CT]CGC.	5'			PDF	PNG	EPS
[CGT]CGTA[CG][CT][AGT].	5'			PDF	PNG	EPS
[CGT]CG.A[AC]AA.	5'		Y	PDF	PNG	EPS
[AGT]CGT.[AG][AT]C[AGT]	5'			PDF	PNG	EPS
[ACG]CGTC[AG][CT]G.	5'			PDF	PNG	EPS
.A[AT]CGAA.[ACG]	5'		Y	PDF	PNG	EPS
.AT[AG][GT]CG[GT].	5'			PDF	PNG	EPS
[AG].AAACG[CGT][ACG]	5'	Y		PDF	PNG	EPS
.TT[AG]CG[GT]C.	5'			PDF	PNG	EPS
.CGC[CGT][CT]AA.	5'		Y	PDF	PNG	EPS
.AT[AC]T[AG]TG[ACT]	5'			PDF	PNG	EPS
[CGT]A[ACT]GT[GT]CG[ACG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.