BM-CD34+_BM-CD34+.txt
Summary
FIRE has discovered 27 motifs from the query data, consisting of 24 from DNA and 3 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[CG]CGGAAG[ACT] 5' Y PDF PNG EPS [ACG]C[AG]T[AGT]CGC[ACG] 5' PDF PNG EPS .[AGT]ACGG[AT][AT]. 5' PDF PNG EPS .UUU[AGU]UAA. 3'UTR Y PDF PNG EPS [AGT]CGT[AGT][GT][ACT]CG 5' PDF PNG EPS [CGT][AC][AT]CGCGA. 5' PDF PNG EPS .A[AT][GT][AGT]CG[AG]C 5' PDF PNG EPS .T[AT]T[CG]CGC[CGT] 5' PDF PNG EPS [ACG]CG[AC]CTAC[AGT] 5' PDF PNG EPS [ACG][AC][CG][CT]CGTA[CGT] 5' Y PDF PNG EPS .CG[CGT]TC[GT]A[ACG] 5' PDF PNG EPS [AGT][CT][CT][CT]TTCG. 5' PDF PNG EPS [AT][AT]ACGC[AG][CT][CGT] 5' PDF PNG EPS [ACG][AT]CG[AT]GA[ACT]. 5' PDF PNG EPS [AGT]ACG[AT]C[AG][CT]. 5' PDF PNG EPS [CG]TA[CGT]CG[AG][AC][ACT] 5' PDF PNG EPS .[CG]CG[AG][AT]AC[AG] 5' PDF PNG EPS [AGT]ACT[AT]CG[CGT]. 5' PDF PNG EPS .[AC][CU]CCG[AG]C[ACG] 3'UTR Y PDF PNG EPS .AGACAG[AG]. 5' PDF PNG EPS .A[AT]T.CGC[CGT] 5' Y PDF PNG EPS [ACT]TCG[GT]TT[ACG]. 5' PDF PNG EPS .CGAT[AT][ACG][AC]. 5' PDF PNG EPS .G[AT][ACG]C[GT]AC[ACG] 5' Y PDF PNG EPS [CT]TCTC[AT]C[CT][AC] 5' PDF PNG EPS [CG]U[AG][CGU]CGC[AC]. 3'UTR Y PDF PNG EPS .[ACG]CGCAAC. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.