FIRE

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ColorectalAdenocarcinoma_ColorectalAdenocarcinoma.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[ACT]CCGGCCC.5' PDF PNG EPS
[ACT][AG]CTTCAT.5' PDF PNG EPS
[ACG]ACT[GT]CCG[CGT]5'Y PDF PNG EPS
[CGT]AC[AC]TTCT[ACG]5' PDF PNG EPS
[AG][AT]GTGG[CG]C.5' PDF PNG EPS
.AG[AC]AATC[ACT]5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.