FIRE

DRG_DRG.txt

Summary

FIRE has discovered 22 motifs from the query data, consisting of 22 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCGGAA[CG].	5'			PDF	PNG	EPS
.T[AGT][AGT]CGTC[ACG]	5'			PDF	PNG	EPS
.[AG][GT]TCTCG.	5'			PDF	PNG	EPS
[CGT]CGCGT[AG][CT].	5'			PDF	PNG	EPS
.CGTG[AG]CC.	5'			PDF	PNG	EPS
.CGGT[AC]G[CT][AGT]	5'			PDF	PNG	EPS
[CT][AGT]TTGCG[ACG].	5'			PDF	PNG	EPS
[AGT][AT]GGCGGA.	5'		Y	PDF	PNG	EPS
.AAATA[AG]T.	5'		Y	PDF	PNG	EPS
[CG]GACGG[AG]C[GT]	5'		Y	PDF	PNG	EPS
[ACG][CGT]ACGCTC[ACG]	5'		Y	PDF	PNG	EPS
.CGT[ACG]GTC.	5'			PDF	PNG	EPS
[CGT]CAA[GT]CG[ACT][ACG]	5'		Y	PDF	PNG	EPS
.GAA[AT]CG[CG].	5'			PDF	PNG	EPS
.A[AG]AGAGA[CGT]	5'			PDF	PNG	EPS
[ACG]CA[ACG]TCGG.	5'		Y	PDF	PNG	EPS
.[AG]GCTATA[AGT]	5'		Y	PDF	PNG	EPS
.CG[AC]TT[AT]C[CGT]	5'			PDF	PNG	EPS
.A[ACG]T[AT][AT]CG[CG]	5'			PDF	PNG	EPS
.[AC]CGCACT.	5'			PDF	PNG	EPS
.[CT]ATGCGC.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.