Heart_Heart.txt
Summary
FIRE has discovered 42 motifs from the query data, consisting of 8 from DNA and 34 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[GU]A[GU]U[AGU]UG. 3'UTR Y PDF PNG EPS .[AT]C[GT]T[CT]CG[CGT] 5' PDF PNG EPS [ACG]CC[AG][AG]C[ACU]A[CGU] 3'UTR Y PDF PNG EPS [CU]U[AGU]U[AC][AG]UGU 3'UTR Y PDF PNG EPS [ACU][AG][CG]UGA[ACU]U[AGU] 3'UTR Y PDF PNG EPS [CGU]C[ACU]CAC[AG][AC][ACU] 3'UTR Y PDF PNG EPS .CACCCA.[CGU] 3'UTR Y PDF PNG EPS [ACG]CC[CGU]GUC[CG][CGU] 3'UTR Y PDF PNG EPS .[AC]UAA[CU]G[GU]. 3'UTR Y PDF PNG EPS .[ACT]AACG[ACT]A. 5' PDF PNG EPS .GUU[AC][AG][AGU][AC][AGU] 3'UTR Y PDF PNG EPS [CGU]CCU[AC]U[CGU]G[CGU] 3'UTR Y PDF PNG EPS .[AU][CU][AC]GUUA[ACU] 3'UTR Y PDF PNG EPS .[AU]UAUG[AG]U[ACU] 3'UTR Y PDF PNG EPS [AGU]A[CGU]UGU[AC]A. 3'UTR Y PDF PNG EPS .C[AU]AC[ACU]UU[AGU] 3'UTR Y PDF PNG EPS [CGU][CG]C[CGU]C[GU]A[GU][ACG] 3'UTR Y PDF PNG EPS .CU[CG]GGGU[CGU] 3'UTR Y PDF PNG EPS [CGU]G[AU]U[ACU]UAU. 3'UTR Y PDF PNG EPS .[AC]GCC[GU][AG]C[ACG] 3'UTR Y PDF PNG EPS .UA[CU]A[GU]GU. 3'UTR Y PDF PNG EPS .[CG]GGU[ACG]UC. 3'UTR Y PDF PNG EPS .CACA[AG][CG]C[CGU] 3'UTR Y PDF PNG EPS .G[AG]CUCC[GU]. 3'UTR Y PDF PNG EPS [CGU][AG][ACU]CCGGC. 3'UTR Y PDF PNG EPS .AU[AGU][CG][CG]UA[AU] 3'UTR Y PDF PNG EPS .[AG][AU][AU]ACCU[AGU] 3'UTR Y PDF PNG EPS [CG]A[CGU][ACG]A[AC][CG]G[CG] 3'UTR Y PDF PNG EPS .UAUA[CG]A[GU]. 3'UTR Y PDF PNG EPS [CGU][AG][GU]UAUUA[ACU] 3'UTR Y PDF PNG EPS [AU]U[CGU][ACU]GUG[ACU][ACU] 3'UTR Y PDF PNG EPS .UAG[AG]U[CU]U. 3'UTR Y PDF PNG EPS [ACU]A[CU]U[CGU]GU[CU]. 3'UTR Y PDF PNG EPS .UGC[CG][CU]UC. 3'UTR Y PDF PNG EPS [CGT]CGAA[AT][AT][AG]. 5' Y PDF PNG EPS [ACG]GGCUUC[CG]. 3'UTR Y PDF PNG EPS .GCGT[CT]A[CT][CT] 5' PDF PNG EPS [CT]ATC[CG][CGT]CG[CG] 5' PDF PNG EPS .UCUUA[AU]U. 3'UTR Y PDF PNG EPS .[GT]ACG[AGT]A[AT][ACT] 5' PDF PNG EPS .CCCAGGG. 5' Y PDF PNG EPS [AGT]A[AT][GT]C[AT]CG. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.