FIRE

PB-CD8+Tcells_PB-CD8+Tcells.txt

Summary

FIRE has discovered 9 motifs from the query data, consisting of 9 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCGGAA[AG].	5'	Y		PDF	PNG	EPS
T[ACT][AT][CT]GCGA[ACG]	5'			PDF	PNG	EPS
[AGT]CA[GT][AGT]CGC[AG]	5'		Y	PDF	PNG	EPS
[ACG][ACG]CGT[CT]A[AC][CG]	5'			PDF	PNG	EPS
[CGT]TACG[ACG][CT][ACT][ACT]	5'		Y	PDF	PNG	EPS
[AGT]C[GT][CG]CGAA.	5'			PDF	PNG	EPS
.CGC[ACT][AG]TA[CGT]	5'		Y	PDF	PNG	EPS
[ACG]AA[CG]GCGG.	5'			PDF	PNG	EPS
[ACT]TG[AT]T[AG]TC[AGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.