SuperiorCervicalGanglion_SuperiorCervicalGanglion.txt
Summary
FIRE has discovered 9 motifs from the query data, consisting of 8 from DNA and 1 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .CCGCCCC. 5' PDF PNG EPS .A[CG]TTCCG. 5' PDF PNG EPS [ACG]CUGC[CGU]C.. 3'UTR Y PDF PNG EPS [CG][CT]AT[GT]CGC. 5' PDF PNG EPS [CGT]TT[AG]CG[CT][ACG][AG] 5' PDF PNG EPS [AC]A[AT]C[AT]A[AT]G[AG] 5' Y PDF PNG EPS .T[AT]CAAG[AC][AGT] 5' PDF PNG EPS .ACACAG[AT]. 5' PDF PNG EPS [CGT]CGAAACG[CGT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.