FIRE

atrioventricularnode_atrioventricularnode.txt

Summary

FIRE has discovered 13 motifs from the query data, consisting of 13 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCGGAA[CG].	5'			PDF	PNG	EPS
[ACG]CG[ACT][ACG]ACG[CT]	5'			PDF	PNG	EPS
[ACT][CG]TCG[CT][AG]A.	5'			PDF	PNG	EPS
[AC][ACG]T[AG]CGCA.	5'			PDF	PNG	EPS
.AT[CG][AG]CG[GT][ACT]	5'			PDF	PNG	EPS
.AAA[CT]AAT[AGT]	5'			PDF	PNG	EPS
[CGT][CG]CGTA[ACT][AC][ACG]	5'			PDF	PNG	EPS
[CGT]CG[CG][GT]AAA.	5'			PDF	PNG	EPS
[AC]AT[GT][AG]CGC.	5'		Y	PDF	PNG	EPS
.CGA[CGT]AAC.	5'			PDF	PNG	EPS
[CG][GT]GCACG[CG][CGT]	5'		Y	PDF	PNG	EPS
[ACG][AT]CGA[ACT][CT]G.	5'			PDF	PNG	EPS
[AGT]ACGG[AT][AC][AG].	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.