FIRE

ciliaryganglion_ciliaryganglion.txt

Summary

FIRE has discovered 11 motifs from the query data, consisting of 11 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCG[GT]AA[CG].	5'			PDF	PNG	EPS
C[AC]T[AG]CG[CT][AG][ACG]	5'			PDF	PNG	EPS
[AT]AT[GT][GT]TCT[ACT]	5'			PDF	PNG	EPS
.[AC][AGT]TG[AG]CG[AT]	5'			PDF	PNG	EPS
.[ACG][CT]AACGC[ACG]	5'		Y	PDF	PNG	EPS
[ACG]CG[AGT]CGAC.	5'		Y	PDF	PNG	EPS
.CA[AGT][GT]TCG[ACG]	5'		Y	PDF	PNG	EPS
.CGCG[CGT]AA[ACG]	5'			PDF	PNG	EPS
[ACG]CGA[ACG][GT][CT]A[CGT]	5'			PDF	PNG	EPS
[GT][ACT][AT]CGCGA[CGT]	5'		Y	PDF	PNG	EPS
.CGTC[AC]TC.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.