FIRE

skin_skin.txt

Summary

FIRE has discovered 12 motifs from the query data, consisting of 12 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCGGAA[ACG][ACT]	5'			PDF	PNG	EPS
[ACG][CG]TGCG[CT]A.	5'			PDF	PNG	EPS
.A[AT]AATAT.	5'			PDF	PNG	EPS
.CGTGG[CT]C.	5'			PDF	PNG	EPS
[ACT]T[CG]GCG[ACT]A.	5'			PDF	PNG	EPS
[ACT][AT]CCGT[ACT]C.	5'			PDF	PNG	EPS
.CG[AGT]AT[CG][CG][CT]	5'			PDF	PNG	EPS
[AGT]GTCG[AGT][AC]C[ACG]	5'			PDF	PNG	EPS
.A[ACT]GACG[AGT][CGT]	5'			PDF	PNG	EPS
.[GT]CGT[AT]CC[ACG]	5'			PDF	PNG	EPS
.CGCTAG[AC][CGT]	5'			PDF	PNG	EPS
.ACG.GT[CT][CGT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.