FIRE

mal_arr11_TP_11_ALL.txt

Summary

FIRE has discovered 9 motifs from the query data, consisting of 9 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.[AT][AG]CACAC[ACT]	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[ACT][AG]GTG[CT]A[ACG].	5'			PDF	PNG	EPS
[AT][AC][AT]GTGC[AG][CGT]	5'			PDF	PNG	EPS
.T[AG]CACAA[AGT]	5'			PDF	PNG	EPS
.AACAC[AC]T.	5'		Y	PDF	PNG	EPS
.[ACT][AG]AGACA.	5'			PDF	PNG	EPS
[ACT][GT]TTCAC[ACG][AT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.