FIRE

mal_arr12_TP_12_ALL.txt

Summary

FIRE has discovered 14 motifs from the query data, consisting of 14 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.T[AGT]CACAC.	5'			PDF	PNG	EPS
[ACG][AG]GTG[CT][ACG][AC][AGT]	5'			PDF	PNG	EPS
[ACT]TAC[AG]C[AC]A.	5'			PDF	PNG	EPS
.[ACT]T[CG]TGC[AG][CGT]	5'			PDF	PNG	EPS
.[AG].CACAC[AG]	5'			PDF	PNG	EPS
..[CT]AGAC[ACG].	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
.AACACAT.	5'			PDF	PNG	EPS
.CA[CT][GT]TG[AG][ACT]	5'		Y	PDF	PNG	EPS
[GT][GT]C[CGT][GT]TG[CT][AGT]	5'		Y	PDF	PNG	EPS
[CGT]ACA[CGT][CGT]G[ACT][AGT]	5'			PDF	PNG	EPS
[ACG][AG]ATGAA[CG][ACT]	5'		Y	PDF	PNG	EPS
[ACT]A[CG]TG[AG]A[AC].	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.