FIRE

mal_arr15_TP_15_ALL.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[AG][CT][AG][CG]ACAC.	5'			PDF	PNG	EPS
.[AC][ACT]GTGC[AG][ACT]	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[ACT].[ACG]AGACA.	5'			PDF	PNG	EPS
.[CGT]T[AC][AG]C[AC]C[AG]	5'			PDF	PNG	EPS
[AGT][AC][CGT]GTAGA[AGT]	5'			PDF	PNG	EPS
[AGT][GT][ACG]CA[AG]CC[AGT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.