FIRE

mal_arr17_TP_17_ALL.txt

Summary

FIRE has discovered 10 motifs from the query data, consisting of 10 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[ACT][AT][AGT]AGACA.	5'			PDF	PNG	EPS
[AG]CA[CG][ACG]C[AC][ACG].	5'			PDF	PNG	EPS
..G[CT]GCA[CT][ACT]	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
..C[AG][GT]GCA.	5'			PDF	PNG	EPS
..[CT]TG[CG]AC.	5'		Y	PDF	PNG	EPS
.[CGT]T[AC][AG]C[ACG]C[AG]	5'			PDF	PNG	EPS
.[CGT][AG]CAACC.	5'		Y	PDF	PNG	EPS
.[AG]TT[CGT]TCC[AC]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.