FIRE

mal_arr24_TP_25_ALL.txt

Summary

FIRE has discovered 13 motifs from the query data, consisting of 13 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.A[AGT]AGACA.	5'			PDF	PNG	EPS
[AGT]TGC[AG][CG].[AC].	5'			PDF	PNG	EPS
.[AGT].GCATG[CGT]	5'			PDF	PNG	EPS
.[AC][ACG]GTGCA.	5'			PDF	PNG	EPS
.[CGT][AG][CG]AAC[CG].	5'			PDF	PNG	EPS
[CT]AG[AT][ACG]C[ACT][AG][AT]	5'		Y	PDF	PNG	EPS
[AT][GT][CGT][AG]GAC[AGT].	5'			PDF	PNG	EPS
.TTAC[AG]CA[ACT]	5'			PDF	PNG	EPS
[ACG]C[AT][CG][ACT]C[AG]C[AC]	5'			PDF	PNG	EPS
.[CGT][CG][AC][CT]TCC[ACT]	5'			PDF	PNG	EPS
[AGT]AA[CT]GG[CT]G[CGT]	5'		Y	PDF	PNG	EPS
[AGT][GT]GAT[CG]AC.	5'			PDF	PNG	EPS
.G[CT]TA[GT]CC[ACG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.