FIRE

mal_arr27_TP_28_ALL.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[ACG]A[AC]C[AC][AG]C[AG].	5'			PDF	PNG	EPS
.[ACG]C[AG][CT]GC[ACT][ACT]	5'			PDF	PNG	EPS
[ACT]A[AGT]GTAGA[ACT]	5'			PDF	PNG	EPS
[AT][CT]A[AG]TCTA[ACT]	5'			PDF	PNG	EPS
.[AG][CT]CGA[AC]T[AGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.