FIRE

mal_arr29_TP_31_ALL.txt

Summary

FIRE has discovered 10 motifs from the query data, consisting of 10 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[ACT]TCTATA[AG][ACT]	5'			PDF	PNG	EPS
.[GT]GT[ACG]T[GT]C[CGT]	5'			PDF	PNG	EPS
.[ACT]TCTACA[AGT]	5'		Y	PDF	PNG	EPS
[ACT][AC]TGT[CG]C[AG][AGT]	5'			PDF	PNG	EPS
[ACT][AG]AC[AC]CAT.	5'			PDF	PNG	EPS
[AT]TAC[AG]C[AG][AG].	5'			PDF	PNG	EPS
.AGTG[ACT]A[AG].	5'		Y	PDF	PNG	EPS
.AC[AC]ACCC[AGT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.