FIRE

mal_arr30_TP_32_ALL.txt

Summary

FIRE has discovered 11 motifs from the query data, consisting of 11 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATATAGA.	5'	Y		PDF	PNG	EPS
.ATGTGTA.	5'			PDF	PNG	EPS
.[ACT]TCTACA[AGT]	5'			PDF	PNG	EPS
[ACT]TCTATAA[ACT]	5'			PDF	PNG	EPS
.[AC][AC]GTG.AA	5'		Y	PDF	PNG	EPS
[ACT][AT]TGT[CG]C[AG][CGT]	5'			PDF	PNG	EPS
[ACT]TAC[AG]C[AC]A.	5'			PDF	PNG	EPS
[AGT][CT][AT]GC[AGT]CA[ACT]	5'			PDF	PNG	EPS
[ACG][CT]A[AG]C[AG]TC[ACG]	5'		Y	PDF	PNG	EPS
.[CG]AC[ACT]C[AG][AG][AGT]	5'			PDF	PNG	EPS
[ACT]AAC[AG]C[AG]T.	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.