FIRE

mal_arr31_TP_33_ALL.txt

Summary

FIRE has discovered 10 motifs from the query data, consisting of 10 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
.[ACT]TCTACA[AGT]	5'			PDF	PNG	EPS
.[ACG][AT]GTGCA.	5'			PDF	PNG	EPS
[AGT]TACAC[AC]A.	5'			PDF	PNG	EPS
[ACT]TCTATA[AG][ACT]	5'			PDF	PNG	EPS
.CACACA[AC].	5'			PDF	PNG	EPS
[ACT][CGT][CT][AG]GAC[AC].	5'			PDF	PNG	EPS
[ACT][CT]AAC[AG]TC[ACG]	5'			PDF	PNG	EPS
.AACACAT[AGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.