FIRE

mal_arr32_TP_34_ALL.txt

Summary

FIRE has discovered 12 motifs from the query data, consisting of 11 from DNA and 1 from RNA.

Combined DNA and RNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.T[AGT]C[AG]CAC.	5'			PDF	PNG	EPS
.ATATAGA.	5'	Y		PDF	PNG	EPS
.[CT]AGAC[ACG][AGT].	5'			PDF	PNG	EPS
[AT][ACT][CT]GTAGA[AGT]	5'			PDF	PNG	EPS
[ACT][AC][AT]GTGCA.	5'			PDF	PNG	EPS
[ACT]T[AG]CACAA.	5'			PDF	PNG	EPS
.[AG][ACG]C[AG]C[AG]CA	5'			PDF	PNG	EPS
[AGU][CG][GU][CG][CU][CG][GU]G[ACG]	3'UTR		Y	PDF	PNG	EPS
[ACT][AG]GA[AC][CGT]TG.	5'			PDF	PNG	EPS
.[AC]TACC[AG][CT][AT]	5'			PDF	PNG	EPS
.C[AG][GT]C[ACG]A[AG][AGT]	5'		Y	PDF	PNG	EPS

Combined motif maps for co-localizing motifs

Motif 1	Motif 2	Location	Maps
.[AC]TACC[AG][CT][AT]	.T[AGT]C[AG]CAC.	5'	PDF	PNG	EPS

Additional information for DNA motifs

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Additional information for RNA motifs

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.