FIRE

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mal_arr39_TP_41_ALL.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
.[AG][ACT]AGACA.5'Y PDF PNG EPS
.TGCAC[ACG]..5' PDF PNG EPS
.[CG]AC[AGT][CG][AG]C[AC]5' PDF PNG EPS
.ATGTGTA.5' PDF PNG EPS
.[ACG]CATGC.[ACT]5' PDF PNG EPS
.[CT]T[AG]GAC[AC].5' PDF PNG EPS
.[CGT][AG]CA[AG]C[CG][AGT]5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.