FIRE

mal_arr41_TP_43_ALL.txt

Summary

FIRE has discovered 9 motifs from the query data, consisting of 9 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.[AG][ACT]AGACA.	5'			PDF	PNG	EPS
.[ACG][CG][AG][CT]GC[AG].	5'			PDF	PNG	EPS
.[AG]C[AC][AG]CC[AC].	5'	Y		PDF	PNG	EPS
[ACG][AG]AC[AC]ACA[ACT]	5'			PDF	PNG	EPS
[AGT]ATATAGA[AC]	5'			PDF	PNG	EPS
.[CT]T[AG]GAC[AT].	5'			PDF	PNG	EPS
[AGT][AT][CT][AC][AG]GCC.	5'			PDF	PNG	EPS
.[CT]AGA[ACG]C[ACT][ACG]	5'			PDF	PNG	EPS
.CAC[AT]C[AG][AC].	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.