FIRE

mal_arr43_TP_45_ALL.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[ACT][AG][ACT]AGACA.	5'			PDF	PNG	EPS
[AGT]ATATAGA[AC]	5'			PDF	PNG	EPS
..[ACG]C[AG][CT]GC[AGT]	5'			PDF	PNG	EPS
[ACG][AG]AC[AC]AC[AGT].	5'			PDF	PNG	EPS
.CC[GT]AT[GT][AC][AGT]	5'			PDF	PNG	EPS
.[ACT][AGT]GGTTG[CT]	5'			PDF	PNG	EPS
[ACG][AG][CG]T[CG]CA[AC].	5'			PDF	PNG	EPS
.T[GT][AG]G[AT]CA.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.