FIRE

mal_arr4_TP_4_ALL.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.[AG]ACAC[AC]T[AT]	5'			PDF	PNG	EPS
.[ACG][ACG]CACAC[ACT]	5'			PDF	PNG	EPS
.[AG]GTGT[ACG][AC].	5'			PDF	PNG	EPS
[ACT]TACAC[AG][AG].	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
..TGTGC[AG][AGT]	5'			PDF	PNG	EPS
[ACT]TCTATAA[ACT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.