FIRE

mal_arr5_TP_5_ALL.txt

Summary

FIRE has discovered 9 motifs from the query data, consisting of 9 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[AG]C[AC][CG]AC[ACT][ACG].	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[AGT]TACAC[AT]A[AGT]	5'			PDF	PNG	EPS
.A[AG]GTGT[AG][ACT]	5'			PDF	PNG	EPS
.AACAC[AC]T.	5'			PDF	PNG	EPS
[ACT][AC]TGTGC[AG].	5'			PDF	PNG	EPS
.[GT]TCTAC[AC][AGT]	5'			PDF	PNG	EPS
.T[CG][CG]TC[ACT]C.	5'	Y		PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.