FIRE

mal_arr6_TP_6_ALL.txt

Summary

FIRE has discovered 11 motifs from the query data, consisting of 11 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[AGT][ACG][GT]GTGC[AG].	5'			PDF	PNG	EPS
.[ACG][ACG]CACAC.	5'			PDF	PNG	EPS
.TA[CG]ACAA[AGT]	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
.A[AG]GTGT[AG].	5'			PDF	PNG	EPS
.AACACAT.	5'			PDF	PNG	EPS
[AGT][AC]C[CGT][CGT]GT[CG][CGT]	5'		Y	PDF	PNG	EPS
[CGT][ACT]C[AT]CC[AC][AC][ACT]	5'			PDF	PNG	EPS
T[ACT]CT[AG][CG]A[ACG][ACG]	5'		Y	PDF	PNG	EPS
.[ACG]CA[AC]ATG[ACG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.