FIRE

mal_arr7_TP_7_ALL.txt

Summary

FIRE has discovered 13 motifs from the query data, consisting of 13 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[AG]CAC[AC]C[AGT][ACG].	5'			PDF	PNG	EPS
[AGT]TAC[AG]C[AC]A[AGT]	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[AT][AC][AGT]GTGC[AG].	5'			PDF	PNG	EPS
[AGT]A[AG]GTGT[ACG].	5'			PDF	PNG	EPS
.AACAC[AC]T.	5'			PDF	PNG	EPS
.[CGT][CT][CG][AC]CA[CG][ACT]	5'			PDF	PNG	EPS
[AGT].AGAC[AC].[CGT]	5'			PDF	PNG	EPS
[CT]T[CT][GT][CT]GC[AG].	5'			PDF	PNG	EPS
.[AT]TCTACA.	5'	Y	Y	PDF	PNG	EPS
[ACT]ACT[AG]GA[ACT].	5'			PDF	PNG	EPS
[AGT][ACG][CT]GATGC[AC]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.