FIRE

mal_arr8_TP_8_ALL.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
[AGT]CACACA[AGT][AGT]	5'			PDF	PNG	EPS
[AT][GT]A[CG]ACAA[AGT]	5'			PDF	PNG	EPS
.[ACT][GT]GTGC[AG].	5'			PDF	PNG	EPS
.A[AG]GTGT[AG][ACT]	5'			PDF	PNG	EPS
.AACACAT.	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
.[AT]TCTAC[AG][AGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.