FIRE

P. falciparum intra-erythrocytic developmental cycle (phase)

Summary

FIRE has discovered 21 motifs from the query data, consisting of 21 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[ACT][AG]CAAC[AG][GT][ACT]	5'			PDF	PNG	EPS
.[ACT]TCTACA[AGT]	5'			PDF	PNG	EPS
.ATATAGA.	5'	Y		PDF	PNG	EPS
[ACT]TCTATAA[ACT]	5'			PDF	PNG	EPS
.[ACG]C[AG]TGC[AGT].	5'			PDF	PNG	EPS
[ACT]AG[AT][AC]CA[AG][AC]	5'			PDF	PNG	EPS
[ACT][AT][ACT]AGACA.	5'			PDF	PNG	EPS
[AG]CAC[AC]C.[ACG].	5'	Y		PDF	PNG	EPS
.[ACT][AGT]GTGCA.	5'			PDF	PNG	EPS
.[CGT][AG]C[AT][AG]CC[AT]	5'			PDF	PNG	EPS
.[GT]GTAT[GT]C.	5'			PDF	PNG	EPS
.A[AT]T[GT]TCC[ACG]	5'		Y	PDF	PNG	EPS
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.AACAC[AC]T.	5'			PDF	PNG	EPS
[AGT][AG][GT]T[AC][GT]CC[ACG]	5'		Y	PDF	PNG	EPS
[AGT]TACAC[AC]A.	5'			PDF	PNG	EPS
[ACG][ACG]GT[CG]TA[ACG].	5'			PDF	PNG	EPS
[AT][AGT][AG][GT]GTCA[AGT]	5'			PDF	PNG	EPS
[AC].[GT]GATC[AC][GT]	5'		Y	PDF	PNG	EPS
[AT][ACG][ACG][AGT]GCC[CGT].	5'		Y	PDF	PNG	EPS
TAATATTA[CGT]	5'			PDF	PNG	EPS

Combined motif maps for co-localizing motifs

Motif 1	Motif 2	Location	Maps
.[ACT][AGT]GTGCA.	.A[AT]T[GT]TCC[ACG]	5'	PDF	PNG	EPS
.[ACT][AGT]GTGCA.	.[CGT][AG]C[AT][AG]CC[AT]	5'	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.