Clustered mouse tissue expression dataset (Su et al, 2004)
Summary
FIRE has discovered 90 motifs from the query data, consisting of 80 from DNA and 10 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .CCCGCCC. 5' PDF PNG EPS .[AT]CTTCCG[CGT] 5' Y PDF PNG EPS ..AAUAAA. 3'UTR Y Y PDF PNG EPS [AG][CT]G[AT]CGT[ACT][ACG] 5' PDF PNG EPS [ACG]CATGCGC[ACG] 5' PDF PNG EPS [CGT]T[ACG]CGAA[ACT]. 5' PDF PNG EPS .[AT]AA[ACT]CG[GT][ACG] 5' PDF PNG EPS .CG[ACT][AGT]AAA. 5' PDF PNG EPS .T[AGT][AC]TATC[CT] 5' PDF PNG EPS .A[AG][AT]T[AC]CG[CGT] 5' PDF PNG EPS [CGT]C[AT][AT][ACT]CGA[CGT] 5' PDF PNG EPS .UUU[GU][AGU]UA[AGU] 3'UTR Y PDF PNG EPS .TACG[CG]C[AT]. 5' PDF PNG EPS [ACG]CA[AT]CCGG. 5' Y PDF PNG EPS .CGAG[ACT]AC[CGT] 5' PDF PNG EPS .[CT]AAT.CG. 5' PDF PNG EPS .CCGT[AC][CGT]A[CGT] 5' Y PDF PNG EPS .TAGCG.A. 5' PDF PNG EPS [CG]CGA[AT][AGT]AC. 5' PDF PNG EPS .A[AT]ACGC[GT]. 5' Y PDF PNG EPS [ACG]TA[AGT]CG[ACG]C[AGT] 5' PDF PNG EPS [AGT][CG]CAACGC. 5' Y PDF PNG EPS [ACT][AT]AT[GT][GT]CG[ACT] 5' Y PDF PNG EPS .TAT[AG]ATC[ACT] 5' PDF PNG EPS [AGT]CGA[AGT]C[AG]A. 5' Y PDF PNG EPS .G.GCCUU. 3'UTR Y PDF PNG EPS [ACG]UG[CU]C[CG][AGU]C[CGU] 3'UTR Y PDF PNG EPS .C[GT][AC]CGTA. 5' PDF PNG EPS .A[CT][GT]A[ACT]CG. 5' PDF PNG EPS .AC[CGT]TGGC. 5' PDF PNG EPS .T[CT]G[CT]CGA. 5' Y PDF PNG EPS [CGT]ATC[AC]AT[AG][CT] 5' Y PDF PNG EPS [AGT][AT][AG]TCGC[AT][CGT] 5' PDF PNG EPS .C[AG]TCG[AG]A[ACG] 5' PDF PNG EPS [ACG][AG]CT[AT]C[CG]T[CG] 5' PDF PNG EPS [ACG]AC[AG]CTCG[ACG] 5' PDF PNG EPS CG[AC]T[GT][CT]A[ACT][CGT] 5' Y PDF PNG EPS .AG[CG]GAGA. 5' PDF PNG EPS .CGACG[AC]A[CGT] 5' Y PDF PNG EPS CTG[CG]CC[AC]A[ACG] 5' PDF PNG EPS .TA[GT]AGAA[AG] 5' PDF PNG EPS [ACG]T[AG]T[ACT]CAC[ACT] 5' PDF PNG EPS [CGU][GU]U[GU]GU[ACG]C. 3'UTR Y PDF PNG EPS .C[CG][CG][GU]U[GU]U. 3'UTR Y PDF PNG EPS [ACG]ACA[GT]CTG[CGT] 5' PDF PNG EPS [CG]AGGG[GT][GT]A. 5' Y PDF PNG EPS GATTGGC[GT][ACG] 5' Y PDF PNG EPS [CT][CG]ACG[CT]GA[CT] 5' Y PDF PNG EPS .CTACG[CT][GT]. 5' PDF PNG EPS .A[AT]GTC[CG]G[AC] 5' Y PDF PNG EPS .CGTCTG[AC][CGT] 5' PDF PNG EPS .CGAC[AG]G[AT][AG] 5' Y PDF PNG EPS [CG][CT]AC[CGT]ACG[AG] 5' Y PDF PNG EPS [CT][AG]CGCAAC. 5' PDF PNG EPS [ACG][ACT]AGGGCA[CGT] 5' PDF PNG EPS [ACT]A[AG]AT[CG]CA[AGT] 5' PDF PNG EPS .TCATACA. 5' PDF PNG EPS .CG[CT]C[AT]AA. 5' Y PDF PNG EPS [ACT][CG]CTGAC[CG]. 5' Y PDF PNG EPS [AT]CATT[AT]TC. 5' PDF PNG EPS [ACG]A[GT]AAC[CG]G. 5' PDF PNG EPS [AGU]A[AU]GA[CU]A[AU][AU] 3'UTR Y PDF PNG EPS .A[ACT]CATTC[AGT] 5' PDF PNG EPS .ATCAGA[AT][AGT] 5' PDF PNG EPS .[CG][AC]U[CU]GG[CGU]. 3'UTR Y PDF PNG EPS .ACAGA[AG]T. 5' PDF PNG EPS [ACG]TGA[AC]TCA[CGT] 5' Y PDF PNG EPS .A[AT]CTCG[AG]. 5' PDF PNG EPS [CG].[AC]C[AU]GUG[ACG] 3'UTR Y PDF PNG EPS [AGT]AGATT[ACG]A. 5' Y PDF PNG EPS .[GT]A[AT]TGTC[ACT] 5' PDF PNG EPS .AGTA[ACG]TA. 5' PDF PNG EPS .ATCA[ACT]CA[ACT] 5' PDF PNG EPS .[AG]ACGGAC[CGT] 5' PDF PNG EPS [CGT]ACATC[AGT]C[ACT] 5' Y Y PDF PNG EPS .[AGT]TCATCT[ACG] 5' PDF PNG EPS [CG]CTG[AG]GCA[AG] 5' PDF PNG EPS [AT]TTCCA[AT]A[CT] 5' PDF PNG EPS [AT]TAA[CT]TGA. 5' PDF PNG EPS [ACG][CT]CTGAGC[CGT] 5' PDF PNG EPS .CG[ACT][AG]TGA. 5' PDF PNG EPS [AGT]A[GT]AAAGA[CGT] 5' Y PDF PNG EPS A[AT]TAGT[CG]A. 5' PDF PNG EPS [ACU]GA[AGU]AAUU. 3'UTR Y PDF PNG EPS .C[CT]CAGTC[ACG] 5' PDF PNG EPS [ACG]A[GT]GCCAG[AGT] 5' PDF PNG EPS .A[GT]AGACA. 5' PDF PNG EPS .AGCAGAG. 5' PDF PNG EPS .ATGAGA[CG][AGT] 5' PDF PNG EPS .AGGGGTG. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.