EXPT116.txt
Summary
FIRE has discovered 17 motifs from the query data, consisting of 15 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[AT][AGT]CGCGC. 5' Y PDF PNG EPS .CTTATCA. 5' Y PDF PNG EPS .CG[AT]G[AG]CC. 5' Y PDF PNG EPS .AATCGA[GT][ACT] 5' PDF PNG EPS [AGT]CGAAG[AG][AC]. 5' PDF PNG EPS [ACU][CGU][GU][ACU][CU]CCC[ACG] 3'UTR Y PDF PNG EPS [AGT][AG]TA[GT]GTA[AGT] 5' PDF PNG EPS [ACU]AAUAAA[ACG]. 3'UTR Y PDF PNG EPS [CT]GCG[GT][AC]C[ACT][CGT] 5' PDF PNG EPS [CGT][ACG]GA[AG]CGA[AGT] 5' PDF PNG EPS [AT][AC]T[CT]C[AT]CG[ACG] 5' Y PDF PNG EPS .CG[CG]TG[AG]A. 5' Y PDF PNG EPS [ACG]G[AC]TTCG[CGT]. 5' PDF PNG EPS .TCGTC[ACG]A. 5' PDF PNG EPS .TG[AG]T[AG][AG]C[CT] 5' PDF PNG EPS [CT].TCAGAC[ACG] 5' PDF PNG EPS .TAGT[AG]T[ACG][AT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.