EXPT190.txt
Summary
FIRE has discovered 16 motifs from the query data, consisting of 13 from DNA and 3 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps [AC][AGT][AG][CT]GCGC. 5' Y PDF PNG EPS [AGT]CG[AG]GACC. 5' Y PDF PNG EPS [ACU]CCC.[AC].[CU][CU] 3'UTR Y PDF PNG EPS [AGT]AATCG[AG]T. 5' PDF PNG EPS [AG].A[AT]TCGC. 5' PDF PNG EPS [ACG]A[CG][CG][ACG]TCG. 5' PDF PNG EPS .CTTATCA. 5' Y PDF PNG EPS .ATTGCG.[ACT] 5' Y PDF PNG EPS [ACG][AG]CGAG[AGT]A[AT] 5' PDF PNG EPS .CGA[AC]GAA. 5' PDF PNG EPS [ACG][ACG]AC[ACG]GCG. 5' PDF PNG EPS .[AC]TATGTA. 5' PDF PNG EPS [CU]AU[CU][CU]AU[ACU][ACU] 3'UTR Y PDF PNG EPS .TATAA[ACT][AG]G 5' Y Y PDF PNG EPS [AGT][CT][GT]CGT[AC]C. 5' PDF PNG EPS .[AG][AG]UAAAA[ACU] 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.