FIRE

EXPT207.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[ACT][AT][AGT]CGCG[CG][CGT]	5'	Y		PDF	PNG	EPS
[CGT]CG[AT]G[AG][AC]C.	5'		Y	PDF	PNG	EPS
[AGT]T[ACT]CGC[AG]A[CGT]	5'		Y	PDF	PNG	EPS
[CGT]C[CT]TA[CT]CA.	5'			PDF	PNG	EPS
.AATCGA[GT][ACT]	5'			PDF	PNG	EPS
[ACT][AC][CT]ATGTA[CGT]	5'			PDF	PNG	EPS
[GT]GACGC[CG][AC][AG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.