EXPT244.txt
Summary
FIRE has discovered 16 motifs from the query data, consisting of 12 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[AG][ACG]CGCGC. 5' Y PDF PNG EPS [AGT]CG[ACG]GACC. 5' PDF PNG EPS [CU]CCC[CGU][ACU].U. 3'UTR Y PDF PNG EPS .[AG]ATCGAT[ACG] 5' PDF PNG EPS [CU][CGU][ACU]UUUAU[ACU] 3'UTR Y PDF PNG EPS [CGT][AT]GCG[CGT][AT]C[AGT] 5' PDF PNG EPS [ACG]GA[AG][AG]CG[AC][AC] 5' PDF PNG EPS [CGT][CG]AGCGA[AGT]. 5' PDF PNG EPS [CT][GT]TCGC[AG]A. 5' PDF PNG EPS [AGT]CG[AC]AG[ACG]A[ACT] 5' PDF PNG EPS [ACT]TCGT[CT]G[AC]. 5' PDF PNG EPS .A[AGU]U[AG]AA[CG][AU] 3'UTR Y PDF PNG EPS .[AT][AT]CGCG[GT]. 5' Y PDF PNG EPS .ATGTA[GT][CG][ACT] 5' Y PDF PNG EPS [ACG][AG]GA[GT]CG[AGT][CG] 5' PDF PNG EPS .UAAU[CU]UAU 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.