FIRE

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EXPT305.txt

Summary

FIRE has discovered 5 motifs from the query data, consisting of 5 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[AGT][AT][AGT]CGC[GT]C[CGT]5' PDF PNG EPS
.AATCGAT.5' PDF PNG EPS
[ACT][AG]TGCG[CT]C[AGT]5' PDF PNG EPS
[CGT]C[AGT]CA[AT]CG[ACT]5' PDF PNG EPS
[ACT]TTCGC[AG][AG].5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.