FIRE

EXPT319.txt

Summary

FIRE has discovered 15 motifs from the query data, consisting of 15 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[GT]CGAGACC.	5'			PDF	PNG	EPS
.AATCGAT.	5'			PDF	PNG	EPS
.TCG[AT]CG.[AGT]	5'			PDF	PNG	EPS
.[GT]TTTCGC[AGT]	5'			PDF	PNG	EPS
.ACC[CT][AC]C[CT][ACT]	5'		Y	PDF	PNG	EPS
[CGT][AG]TA[GT]GTA.	5'			PDF	PNG	EPS
.CGAA[AGT]TC.	5'			PDF	PNG	EPS
.CGAAG[ACT]A.	5'			PDF	PNG	EPS
[AGT]ACATAG[AGT].	5'			PDF	PNG	EPS
[CT][CT]GCG[GT][ACT]C.	5'			PDF	PNG	EPS
[ACT]CGAG[AC]AA[AGT]	5'			PDF	PNG	EPS
.ACG[AC]C[AG][CGT][GT]	5'			PDF	PNG	EPS
.ATCG[CT][GT]G[ACT]	5'			PDF	PNG	EPS
.CTTA[ACT]CA[ACT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.