FIRE

EXPT331.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[GT]CG[AG]GACC[ACT]	5'			PDF	PNG	EPS
.T[GT]CGCG[CGT].	5'			PDF	PNG	EPS
.AATCGAT.	5'			PDF	PNG	EPS
.[ACT]ACC[CT]AC[ACT]	5'		Y	PDF	PNG	EPS
[ACG][GT]GCGC[AT]C[CGT]	5'			PDF	PNG	EPS
[GT][ACT][CT]CGC[AG]A[CGT]	5'			PDF	PNG	EPS
.ATCG[ACT][CG]G[ACT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.