EXPT34.txt
Summary
FIRE has discovered 7 motifs from the query data, consisting of 4 from DNA and 3 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .UCCC[ACU][CGU][CGU][ACU] 3'UTR Y PDF PNG EPS .UGUA.[AC]U[ACU] 3'UTR Y PDF PNG EPS .GA[ACG]U[ACG]AA[AGU] 3'UTR Y Y PDF PNG EPS [ACT][AC]CGTG[AGT]A[AC] 5' Y Y PDF PNG EPS .[AG]CG[AC]AGA[ACG] 5' PDF PNG EPS [ACG]A[AG]TCGAT[AT] 5' Y PDF PNG EPS [ACG]TCGT[GT][AGT]C. 5' Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.