EXPT378.txt
Summary
FIRE has discovered 12 motifs from the query data, consisting of 7 from DNA and 5 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [AC][AG][AGT][CT]GCGC[CGT] 5' PDF PNG EPS .CG[AG][GT]ACC. 5' PDF PNG EPS [GT]CA.CG[AGT]C[AGT] 5' Y PDF PNG EPS [ACU]UUC[ACG]U[CU][CG]. 3'UTR Y PDF PNG EPS .TT[CGT]TCGC[CGT] 5' Y PDF PNG EPS [GT]CGA[AG]GA[AGT]. 5' PDF PNG EPS ..C[GU]C[ACU]CC. 3'UTR Y PDF PNG EPS [AGT]TCGATAA. 5' Y PDF PNG EPS [CGU][GU][CU]G[CU]UAU[ACU] 3'UTR Y PDF PNG EPS [AGT]CCGTA.C[ACG] 5' PDF PNG EPS .U[AU]CCC[CG][GU][CU] 3'UTR Y PDF PNG EPS .AUUC[CU][ACG][CU]. 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.