FIRE

EXPT400.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[AGT][ACT][AG]CGC[GT]C[CGT]	5'			PDF	PNG	EPS
.[AG]A[GT]CGAT[AT]	5'			PDF	PNG	EPS
[GT][CG][CT]G[AG]G[AGT]CC	5'			PDF	PNG	EPS
.T[AT]CGC[AC][AG][CT]	5'			PDF	PNG	EPS
[ACT]AT[CG]CGCC[AGT]	5'			PDF	PNG	EPS
.[GT]C[AG]TCGA[ACT]	5'		Y	PDF	PNG	EPS
.CTTAGA[ACT][CG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.