EXPT403.txt
Summary
FIRE has discovered 20 motifs from the query data, consisting of 16 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .CGCGC.[CG]. 5' Y PDF PNG EPS [ACG][AG]A[GT]CGAT[AT] 5' PDF PNG EPS [ACU]..[CU]CCCC. 3'UTR Y Y PDF PNG EPS .CG[AG]GACC. 5' PDF PNG EPS [CU]U[AC]UU[CU][AG]U[AGU] 3'UTR Y PDF PNG EPS [CT]TGCG[CGT][AC]C. 5' PDF PNG EPS [CGT][ACG][CT][CT]GCGA[ACT] 5' Y PDF PNG EPS [AGT]CGAAG[AG][AG]. 5' PDF PNG EPS .CGTCG[AG].[AGT] 5' PDF PNG EPS [ACT][AC]TCG[AGT][CG]C[ACG] 5' Y PDF PNG EPS .T[GT]CGCT[CG]. 5' Y PDF PNG EPS AA[AT]TCG[ACT]G[ACT] 5' PDF PNG EPS .[ACT]CA[AC]CGC[AGT] 5' PDF PNG EPS .[ACT]A[AG]CGAG[AG] 5' PDF PNG EPS [ACG]ACGACA[CGT][CT] 5' PDF PNG EPS [ACT][AT]GATA[AT]G[AT] 5' PDF PNG EPS .TGGCG[AG]C[CGT] 5' PDF PNG EPS [CGU]U.CCUUU. 3'UTR Y PDF PNG EPS .[GU][AC]AUAAA[AGU] 3'UTR Y PDF PNG EPS .TACCAAA. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.