EXPT405.txt
Summary
FIRE has discovered 16 motifs from the query data, consisting of 12 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps [ACU][CGU][CU][CGU]CCC[CGU][CU] 3'UTR Y PDF PNG EPS .A[ACG]CGCGC. 5' PDF PNG EPS .CG[ACG]GAC[CG]. 5' PDF PNG EPS .AATCGAT. 5' PDF PNG EPS [AC]CGCA[AG][ACG][CG][AGT] 5' PDF PNG EPS [AGU][ACU]AAUAAA[ACG] 3'UTR Y PDF PNG EPS [GT]T[CGT]CGC[AG][AG][CGT] 5' PDF PNG EPS [CGU]UA[AU]U[CU][AC][CU][CU] 3'UTR Y PDF PNG EPS [AG][AT][CGT]CGC[AT]C. 5' PDF PNG EPS [AGT]CG[AC][AG]GAA[AGT] 5' PDF PNG EPS [AGT][AC]T[AT]CGCG[ACG] 5' PDF PNG EPS .AAU[AC]A[AG]U[AGU] 3'UTR Y PDF PNG EPS .CC[CG]TGGC. 5' PDF PNG EPS [ACG]AAC[AG]TGT[CGT] 5' Y PDF PNG EPS [AGT]A[AT]GGT[CT]A[ACG] 5' PDF PNG EPS .ATTTTCG. 5' Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.