EXPT409.txt
Summary
FIRE has discovered 28 motifs from the query data, consisting of 23 from DNA and 5 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps .CGCGC.[CG]. 5' Y PDF PNG EPS [CGU][AC][CU][CU].CCC. 3'UTR Y Y PDF PNG EPS [AGT]CG[AG]G[AG]CC[ACT] 5' PDF PNG EPS .AATCGAT. 5' PDF PNG EPS .U[AC]U[CU]U[AC]U[CU] 3'UTR Y PDF PNG EPS [AGT]T[CGT]TTCGC. 5' Y Y PDF PNG EPS .[AT]GCG[CT][AT]C[CGT] 5' PDF PNG EPS [ACG]ACG[AC]G[AG]A. 5' PDF PNG EPS [ACU]AAUAAA[ACG]. 3'UTR Y PDF PNG EPS [AT]A[ACT][ACG][AT]CGC[GT] 5' Y PDF PNG EPS [ACG][AG][AC]AT.CGC 5' PDF PNG EPS .C[CGT]C[AT]TCG. 5' Y PDF PNG EPS [AT][CT].CGACG[ACT] 5' PDF PNG EPS [AGU]AUU[CG]CU[CGU][CGU] 3'UTR Y PDF PNG EPS .[CT]AC[ACG]TAC[ACT] 5' PDF PNG EPS [CGU]U[AU][AG]U[CU]A[AU]U 3'UTR Y PDF PNG EPS [AGT][AC]ACTT[AT]G[AG] 5' Y PDF PNG EPS .ACCG[CT]A[CGT]. 5' PDF PNG EPS [CGT]CGA[AG][ACG]GA[AGT] 5' PDF PNG EPS [ACT]CTTA[GT]C[AT][AGT] 5' PDF PNG EPS [ACT]CGC[ACG]AG[ACG]. 5' PDF PNG EPS [AGT]CCG[ACT][AT]CG. 5' PDF PNG EPS .ATGC[AGT][CG]C[AGT] 5' PDF PNG EPS [ACG][ACG]T[AT]TCGC[AG] 5' PDF PNG EPS [AGT][AG][CG][AC]CTTA[AGT] 5' PDF PNG EPS .GT[CGT]CG[CT]C. 5' PDF PNG EPS [AC][AC]TACCA[AT]. 5' PDF PNG EPS .AGTA[GT]G[ACG][AGT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.