EXPT410.txt
Summary
FIRE has discovered 31 motifs from the query data, consisting of 23 from DNA and 8 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps [ACT][ACG][AG][CT]GCGC[CGT] 5' Y PDF PNG EPS [CU][ACU]UCCC.[CU]. 3'UTR Y PDF PNG EPS .CG[AG]GACC. 5' PDF PNG EPS [CU]U[AG]UU[CGU][AC]U[CGU] 3'UTR Y PDF PNG EPS .AATCGAT. 5' PDF PNG EPS [CGT]T[AT]CGC[AG]A. 5' PDF PNG EPS ..[AC]TCGCT[CGT] 5' Y PDF PNG EPS .CGAAG[AG][AG][AGT] 5' PDF PNG EPS [AGU][CU][AG]UUC[CG][CU][ACU] 3'UTR Y PDF PNG EPS [AG][AT]CGAG[ACG]A[AGT] 5' PDF PNG EPS .[GU]CC[CG]C[AG]U[ACU] 3'UTR Y PDF PNG EPS .[AG][AGU]AC[AU]U[AG][ACG] 3'UTR Y PDF PNG EPS .U[AG][ACU]U[CU]UAU 3'UTR Y PDF PNG EPS .CG[ACT]A[AC]GC. 5' PDF PNG EPS [ACG]TAGGT[AGT][ACG][AGT] 5' PDF PNG EPS .UUCUU[GU]U. 3'UTR Y PDF PNG EPS [AC]ACA.CGC[AG] 5' PDF PNG EPS ACACTC[CG]G[ACT] 5' PDF PNG EPS .[CG]G[AC]CGAA. 5' PDF PNG EPS [AT]ACGA[AC][AG]A[CGT] 5' PDF PNG EPS [AGT]AC[AC]T[AG][GT]G[ACT] 5' PDF PNG EPS [CGT]CGC[ACT]GTC. 5' PDF PNG EPS [AGT]AATTCG[AC][AGT] 5' PDF PNG EPS .C[AG]CGGCC. 5' PDF PNG EPS [AGT][AG]TATGTA. 5' PDF PNG EPS .TCGT[CG]AA[AGT] 5' PDF PNG EPS .TACCAA[AG]. 5' PDF PNG EPS .AA[ACG]UAAA. 3'UTR Y PDF PNG EPS [ACT]AGTAT[CG]A. 5' PDF PNG EPS [ACT]T[AT]TGGCA. 5' Y PDF PNG EPS .AAACTTT. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.