EXPT412.txt
Summary
FIRE has discovered 15 motifs from the query data, consisting of 11 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .A[ACG][CT]GCGC[CGT] 5' PDF PNG EPS [ACG][AG]A[GT]CGAT[AT] 5' PDF PNG EPS [CU]C..UC[CU]C. 3'UTR Y PDF PNG EPS .CG[AG]GACC[ACT] 5' Y PDF PNG EPS UUAU[ACU][CU][AC]U[CGU] 3'UTR Y PDF PNG EPS .[AT]C[CG][AG]CG[AG][GT] 5' PDF PNG EPS [AGU]U[AG][AC][CGU]AAA[ACG] 3'UTR Y PDF PNG EPS [AGT]T[ACT]TTCGC. 5' Y PDF PNG EPS [CGU]UA.UCCC. 3'UTR Y PDF PNG EPS [ACG][AC]T[AT]CGCG. 5' PDF PNG EPS [AGT][CT]T[CGT][AC]CGC[AG] 5' Y PDF PNG EPS .A[CT]CG[CGT]AG. 5' Y PDF PNG EPS .TCTCTTC. 5' PDF PNG EPS .ACTTTTG[ACG] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.