EXPT414.txt
Summary
FIRE has discovered 7 motifs from the query data, consisting of 5 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .A[ACG][CT]GCGC[CGT] 5' PDF PNG EPS .[ACU].[CU]CCCC[ACG] 3'UTR Y PDF PNG EPS .A[AG]U[ACG]AA[CG][AGU] 3'UTR Y PDF PNG EPS .CG[AC]G[AGT]CC. 5' PDF PNG EPS .GACG[CG][AGT]C. 5' PDF PNG EPS .AATCG[AC]T[ACT] 5' PDF PNG EPS [ACG]GAG[ACT]G[AC][CG][AG] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.